From: Vicent Marti <tanoku@gmail.com>
To: git@vger.kernel.org
Cc: Vicent Marti <tanoku@gmail.com>
Subject: [PATCH 08/16] ewah: compressed bitmap implementation
Date: Tue, 25 Jun 2013 01:23:05 +0200 [thread overview]
Message-ID: <1372116193-32762-9-git-send-email-tanoku@gmail.com> (raw)
In-Reply-To: <1372116193-32762-1-git-send-email-tanoku@gmail.com>
EWAH is a word-aligned compressed variant of a bitset (i.e. a data
structure that acts as a 0-indexed boolean array for many entries).
It uses a 64-bit run-length encoding (RLE) compression scheme,
trading some compression for better processing speed.
The goal of this word-aligned implementation is not to achieve
the best compression, but rather to improve query processing time.
As it stands right now, this EWAH implementation will always be more
efficient storage-wise than its uncompressed alternative.
EWAH arrays will be used as the on-disk format to store reachability
bitmaps for all objects in a repository while keeping reasonable sizes,
in the same way that JGit does.
This EWAH implementation is a mostly straightforward port of the
original `javaewah` library that JGit currently uses. The library is
self-contained and has been embedded whole (4 files) inside the `ewah`
folder to ease redistribution.
The library is re-licensed under the GPLv2 with the permission of Daniel
Lemire, the original author. The source code for the C version can
be found on GitHub:
https://github.com/vmg/libewok
The original Java implementation can also be found on GitHub:
https://github.com/lemire/javaewah
---
Makefile | 6 +
ewah/bitmap.c | 229 +++++++++++++++++
ewah/ewah_bitmap.c | 703 ++++++++++++++++++++++++++++++++++++++++++++++++++++
ewah/ewah_io.c | 199 +++++++++++++++
ewah/ewah_rlw.c | 124 +++++++++
ewah/ewok.h | 194 +++++++++++++++
ewah/ewok_rlw.h | 114 +++++++++
7 files changed, 1569 insertions(+)
create mode 100644 ewah/bitmap.c
create mode 100644 ewah/ewah_bitmap.c
create mode 100644 ewah/ewah_io.c
create mode 100644 ewah/ewah_rlw.c
create mode 100644 ewah/ewok.h
create mode 100644 ewah/ewok_rlw.h
diff --git a/Makefile b/Makefile
index e01506d..e03c773 100644
--- a/Makefile
+++ b/Makefile
@@ -672,6 +672,8 @@ LIB_H += diff.h
LIB_H += diffcore.h
LIB_H += dir.h
LIB_H += exec_cmd.h
+LIB_H += ewah/ewok.h
+LIB_H += ewah/ewok_rlw.h
LIB_H += fetch-pack.h
LIB_H += fmt-merge-msg.h
LIB_H += fsck.h
@@ -802,6 +804,10 @@ LIB_OBJS += dir.o
LIB_OBJS += editor.o
LIB_OBJS += entry.o
LIB_OBJS += environment.o
+LIB_OBJS += ewah/bitmap.o
+LIB_OBJS += ewah/ewah_bitmap.o
+LIB_OBJS += ewah/ewah_io.o
+LIB_OBJS += ewah/ewah_rlw.o
LIB_OBJS += exec_cmd.o
LIB_OBJS += fetch-pack.o
LIB_OBJS += fsck.o
diff --git a/ewah/bitmap.c b/ewah/bitmap.c
new file mode 100644
index 0000000..75ca8fd
--- /dev/null
+++ b/ewah/bitmap.c
@@ -0,0 +1,229 @@
+/**
+ * Copyright 2013, GitHub, Inc
+ * Copyright 2009-2013, Daniel Lemire, Cliff Moon,
+ * David McIntosh, Robert Becho, Google Inc. and Veronika Zenz
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+#include <assert.h>
+#include <stdlib.h>
+#include <string.h>
+
+#include "ewok.h"
+
+#define MASK(x) ((eword_t)1 << (x % BITS_IN_WORD))
+#define BLOCK(x) (x / BITS_IN_WORD)
+
+struct bitmap *bitmap_new(void)
+{
+ struct bitmap *bitmap = ewah_malloc(sizeof(struct bitmap));
+ bitmap->words = ewah_calloc(32, sizeof(eword_t));
+ bitmap->word_alloc = 32;
+ return bitmap;
+}
+
+void bitmap_set(struct bitmap *self, size_t pos)
+{
+ size_t block = BLOCK(pos);
+
+ if (block >= self->word_alloc) {
+ size_t old_size = self->word_alloc;
+ self->word_alloc = block * 2;
+ self->words = ewah_realloc(self->words, self->word_alloc * sizeof(eword_t));
+
+ memset(self->words + old_size, 0x0,
+ (self->word_alloc - old_size) * sizeof(eword_t));
+ }
+
+ self->words[block] |= MASK(pos);
+}
+
+void bitmap_clear(struct bitmap *self, size_t pos)
+{
+ size_t block = BLOCK(pos);
+
+ if (block < self->word_alloc)
+ self->words[block] &= ~MASK(pos);
+}
+
+bool bitmap_get(struct bitmap *self, size_t pos)
+{
+ size_t block = BLOCK(pos);
+ return block < self->word_alloc && (self->words[block] & MASK(pos)) != 0;
+}
+
+extern size_t ewah_add_empty_words(struct ewah_bitmap *self, bool v, size_t number);
+extern size_t ewah_add(struct ewah_bitmap *self, eword_t word);
+
+struct ewah_bitmap *bitmap_to_ewah(struct bitmap *bitmap)
+{
+ struct ewah_bitmap *ewah = ewah_new();
+ size_t i, running_empty_words = 0;
+ eword_t last_word = 0;
+
+ for (i = 0; i < bitmap->word_alloc; ++i) {
+ if (bitmap->words[i] == 0) {
+ running_empty_words++;
+ continue;
+ }
+
+ if (last_word != 0) {
+ ewah_add(ewah, last_word);
+ }
+
+ if (running_empty_words > 0) {
+ ewah_add_empty_words(ewah, false, running_empty_words);
+ running_empty_words = 0;
+ }
+
+ last_word = bitmap->words[i];
+ }
+
+ ewah_add(ewah, last_word);
+ return ewah;
+}
+
+struct bitmap *ewah_to_bitmap(struct ewah_bitmap *ewah)
+{
+ struct bitmap *bitmap = bitmap_new();
+ struct ewah_iterator it;
+ eword_t blowup;
+ size_t i = 0;
+
+ ewah_iterator_init(&it, ewah);
+
+ while (ewah_iterator_next(&blowup, &it)) {
+ if (i >= bitmap->word_alloc) {
+ bitmap->word_alloc *= 1.5;
+ bitmap->words = ewah_realloc(
+ bitmap->words, bitmap->word_alloc * sizeof(eword_t));
+ }
+
+ bitmap->words[i++] = blowup;
+ }
+
+ bitmap->word_alloc = i;
+ return bitmap;
+}
+
+void bitmap_and_not_inplace(struct bitmap *self, struct bitmap *other)
+{
+ const size_t count = (self->word_alloc < other->word_alloc) ?
+ self->word_alloc : other->word_alloc;
+
+ size_t i;
+
+ for (i = 0; i < count; ++i) {
+ self->words[i] &= ~other->words[i];
+ }
+}
+
+void bitmap_or_inplace(struct bitmap *self, struct ewah_bitmap *other)
+{
+ size_t original_size = self->word_alloc;
+ size_t other_final = (other->bit_size / BITS_IN_WORD) + 1;
+ size_t i = 0;
+ struct ewah_iterator it;
+ eword_t word;
+
+ if (self->word_alloc < other_final) {
+ self->word_alloc = other_final;
+ self->words = ewah_realloc(self->words, self->word_alloc * sizeof(eword_t));
+ memset(self->words + original_size, 0x0,
+ (self->word_alloc - original_size) * sizeof(eword_t));
+ }
+
+ ewah_iterator_init(&it, other);
+
+ while (ewah_iterator_next(&word, &it)) {
+ self->words[i++] |= word;
+ }
+}
+
+void bitmap_each_bit(struct bitmap *self, ewah_callback callback, void *data)
+{
+ size_t pos = 0, i;
+
+ for (i = 0; i < self->word_alloc; ++i) {
+ eword_t word = self->words[i];
+ uint32_t offset;
+
+ if (word == (eword_t)~0) {
+ for (offset = 0; offset < BITS_IN_WORD; ++offset) {
+ callback(pos++, data);
+ }
+ } else {
+ for (offset = 0; offset < BITS_IN_WORD; ++offset) {
+ if ((word >> offset) == 0)
+ break;
+
+ offset += __builtin_ctzll(word >> offset);
+ callback(pos + offset, data);
+ }
+ pos += BITS_IN_WORD;
+ }
+ }
+}
+
+size_t bitmap_popcount(struct bitmap *self)
+{
+ size_t i, count = 0;
+
+ for (i = 0; i < self->word_alloc; ++i) {
+ count += __builtin_popcountll(self->words[i]);
+ }
+
+ return count;
+}
+
+bool bitmap_equals(struct bitmap *self, struct bitmap *other)
+{
+ struct bitmap *big, *small;
+ size_t i;
+
+ if (self->word_alloc < other->word_alloc) {
+ small = self;
+ big = other;
+ } else {
+ small = other;
+ big = self;
+ }
+
+ for (i = 0; i < small->word_alloc; ++i) {
+ if (small->words[i] != big->words[i])
+ return false;
+ }
+
+ for (; i < big->word_alloc; ++i) {
+ if (big->words[i] != 0)
+ return false;
+ }
+
+ return true;
+}
+
+void bitmap_reset(struct bitmap *bitmap)
+{
+ memset(bitmap->words, 0x0, bitmap->word_alloc * sizeof(eword_t));
+}
+
+void bitmap_free(struct bitmap *bitmap)
+{
+ if (bitmap == NULL)
+ return;
+
+ free(bitmap->words);
+ free(bitmap);
+}
diff --git a/ewah/ewah_bitmap.c b/ewah/ewah_bitmap.c
new file mode 100644
index 0000000..8a23494
--- /dev/null
+++ b/ewah/ewah_bitmap.c
@@ -0,0 +1,703 @@
+/**
+ * Copyright 2013, GitHub, Inc
+ * Copyright 2009-2013, Daniel Lemire, Cliff Moon,
+ * David McIntosh, Robert Becho, Google Inc. and Veronika Zenz
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+#include <assert.h>
+#include <stdlib.h>
+#include <unistd.h>
+#include <string.h>
+#include <stdio.h>
+
+#include "ewok.h"
+#include "ewok_rlw.h"
+
+static inline size_t min_size(size_t a, size_t b)
+{
+ return a < b ? a : b;
+}
+
+static inline size_t max_size(size_t a, size_t b)
+{
+ return a < b ? a : b;
+}
+
+static inline void buffer_grow(struct ewah_bitmap *self, size_t new_size)
+{
+ size_t rlw_offset = (uint8_t *)self->rlw - (uint8_t *)self->buffer;
+
+ if (self->alloc_size >= new_size)
+ return;
+
+ self->alloc_size = new_size;
+ self->buffer = ewah_realloc(self->buffer, self->alloc_size * sizeof(eword_t));
+ self->rlw = self->buffer + (rlw_offset / sizeof(size_t));
+}
+
+static inline void buffer_push(struct ewah_bitmap *self, eword_t value)
+{
+ if (self->buffer_size + 1 >= self->alloc_size) {
+ buffer_grow(self, self->buffer_size * 1.5);
+ }
+
+ self->buffer[self->buffer_size++] = value;
+}
+
+static void buffer_push_rlw(struct ewah_bitmap *self, eword_t value)
+{
+ buffer_push(self, value);
+ self->rlw = self->buffer + self->buffer_size - 1;
+}
+
+static size_t add_empty_words(struct ewah_bitmap *self, bool v, size_t number)
+{
+ size_t added = 0;
+
+ if (rlw_get_run_bit(self->rlw) != v && rlw_size(self->rlw) == 0) {
+ rlw_set_run_bit(self->rlw, v);
+ }
+ else if (rlw_get_literal_words(self->rlw) != 0 || rlw_get_run_bit(self->rlw) != v) {
+ buffer_push_rlw(self, 0);
+ if (v) rlw_set_run_bit(self->rlw, v);
+ added++;
+ }
+
+ eword_t runlen = rlw_get_running_len(self->rlw);
+ eword_t can_add = min_size(number, RLW_LARGEST_RUNNING_COUNT - runlen);
+
+ rlw_set_running_len(self->rlw, runlen + can_add);
+ number -= can_add;
+
+ while (number >= RLW_LARGEST_RUNNING_COUNT) {
+ buffer_push_rlw(self, 0);
+ added++;
+
+ if (v) rlw_set_run_bit(self->rlw, v);
+ rlw_set_running_len(self->rlw, RLW_LARGEST_RUNNING_COUNT);
+
+ number -= RLW_LARGEST_RUNNING_COUNT;
+ }
+
+ if (number > 0) {
+ buffer_push_rlw(self, 0);
+ added++;
+
+ if (v) rlw_set_run_bit(self->rlw, v);
+ rlw_set_running_len(self->rlw, number);
+ }
+
+ return added;
+}
+
+size_t ewah_add_empty_words(struct ewah_bitmap *self, bool v, size_t number)
+{
+ if (number == 0)
+ return 0;
+
+ self->bit_size += number * BITS_IN_WORD;
+ return add_empty_words(self, v, number);
+}
+
+static size_t add_literal(struct ewah_bitmap *self, eword_t new_data)
+{
+ eword_t current_num = rlw_get_literal_words(self->rlw);
+
+ if (current_num >= RLW_LARGEST_LITERAL_COUNT) {
+ buffer_push_rlw(self, 0);
+
+ rlw_set_literal_words(self->rlw, 1);
+ buffer_push(self, new_data);
+ return 2;
+ }
+
+ rlw_set_literal_words(self->rlw, current_num + 1);
+
+ /* sanity check */
+ assert(rlw_get_literal_words(self->rlw) == current_num + 1);
+
+ buffer_push(self, new_data);
+ return 1;
+}
+
+void ewah_add_dirty_words(
+ struct ewah_bitmap *self, const eword_t *buffer, size_t number, bool negate)
+{
+ size_t literals, can_add;
+
+ while (1) {
+ literals = rlw_get_literal_words(self->rlw);
+ can_add = min_size(number, RLW_LARGEST_LITERAL_COUNT - literals);
+
+ rlw_set_literal_words(self->rlw, literals + can_add);
+
+ if (self->buffer_size + can_add >= self->alloc_size) {
+ buffer_grow(self, (self->buffer_size + can_add) * 1.5);
+ }
+
+ if (negate) {
+ size_t i;
+ for (i = 0; i < can_add; ++i)
+ self->buffer[self->buffer_size++] = ~buffer[i];
+ } else {
+ memcpy(self->buffer + self->buffer_size, buffer, can_add * sizeof(eword_t));
+ self->buffer_size += can_add;
+ }
+
+ self->bit_size += can_add * BITS_IN_WORD;
+
+ if (number - can_add == 0)
+ break;
+
+ buffer_push_rlw(self, 0);
+ buffer += can_add;
+ number -= can_add;
+ }
+}
+
+static size_t add_empty_word(struct ewah_bitmap *self, bool v)
+{
+ bool no_literal = (rlw_get_literal_words(self->rlw) == 0);
+ eword_t run_len = rlw_get_running_len(self->rlw);
+
+ if (no_literal && run_len == 0) {
+ rlw_set_run_bit(self->rlw, v);
+ assert(rlw_get_run_bit(self->rlw) == v);
+ }
+
+ if (no_literal && rlw_get_run_bit(self->rlw) == v &&
+ run_len < RLW_LARGEST_RUNNING_COUNT) {
+ rlw_set_running_len(self->rlw, run_len + 1);
+ assert(rlw_get_running_len(self->rlw) == run_len + 1);
+ return 0;
+ }
+
+ else {
+ buffer_push_rlw(self, 0);
+
+ assert(rlw_get_running_len(self->rlw) == 0);
+ assert(rlw_get_run_bit(self->rlw) == 0);
+ assert(rlw_get_literal_words(self->rlw) == 0);
+
+ rlw_set_run_bit(self->rlw, v);
+ assert(rlw_get_run_bit(self->rlw) == v);
+
+ rlw_set_running_len(self->rlw, 1);
+ assert(rlw_get_running_len(self->rlw) == 1);
+ assert(rlw_get_literal_words(self->rlw) == 0);
+ return 1;
+ }
+}
+
+size_t ewah_add(struct ewah_bitmap *self, eword_t word)
+{
+ self->bit_size += BITS_IN_WORD;
+
+ if (word == 0)
+ return add_empty_word(self, false);
+
+ if (word == (eword_t)(~0))
+ return add_empty_word(self, true);
+
+ return add_literal(self, word);
+}
+
+void ewah_set(struct ewah_bitmap *self, size_t i)
+{
+ const size_t dist =
+ (i + BITS_IN_WORD) / BITS_IN_WORD -
+ (self->bit_size + BITS_IN_WORD - 1) / BITS_IN_WORD;
+
+ assert(i >= self->bit_size);
+
+ self->bit_size = i + 1;
+
+ if (dist > 0) {
+ if (dist > 1)
+ add_empty_words(self, false, dist - 1);
+
+ add_literal(self, (eword_t)1 << (i % BITS_IN_WORD));
+ return;
+ }
+
+ if (rlw_get_literal_words(self->rlw) == 0) {
+ rlw_set_running_len(self->rlw, rlw_get_running_len(self->rlw) - 1);
+ add_literal(self, (eword_t)1 << (i % BITS_IN_WORD));
+ return;
+ }
+
+ self->buffer[self->buffer_size - 1] |= ((eword_t)1 << (i % BITS_IN_WORD));
+
+ /* check if we just completed a stream of 1s */
+ if (self->buffer[self->buffer_size - 1] == (eword_t)(~0)) {
+ self->buffer[--self->buffer_size] = 0;
+ rlw_set_literal_words(self->rlw, rlw_get_literal_words(self->rlw) - 1);
+ add_empty_word(self, true);
+ }
+}
+
+void ewah_each_bit(struct ewah_bitmap *self, void (*callback)(size_t, void*), void *payload)
+{
+ size_t pos = 0;
+ size_t pointer = 0;
+ size_t k;
+
+ while (pointer < self->buffer_size) {
+ eword_t *word = &self->buffer[pointer];
+
+ if (rlw_get_run_bit(word)) {
+ size_t len = rlw_get_running_len(word) * BITS_IN_WORD;
+ for (k = 0; k < len; ++k, ++pos) {
+ callback(pos, payload);
+ }
+ } else {
+ pos += rlw_get_running_len(word) * BITS_IN_WORD;
+ }
+
+ ++pointer;
+
+ for (k = 0; k < rlw_get_literal_words(word); ++k) {
+ int c;
+
+ /* todo: zero count optimization */
+ for (c = 0; c < BITS_IN_WORD; ++c, ++pos) {
+ if ((self->buffer[pointer] & ((eword_t)1 << c)) != 0) {
+ callback(pos, payload);
+ }
+ }
+
+ ++pointer;
+ }
+ }
+}
+
+struct ewah_bitmap *ewah_new(void)
+{
+ struct ewah_bitmap *bitmap;
+
+ bitmap = ewah_malloc(sizeof(struct ewah_bitmap));
+ if (bitmap == NULL)
+ return NULL;
+
+ bitmap->buffer = ewah_malloc(32 * sizeof(eword_t));
+ bitmap->alloc_size = 32;
+
+ ewah_clear(bitmap);
+
+ return bitmap;
+}
+
+void ewah_clear(struct ewah_bitmap *bitmap)
+{
+ bitmap->buffer_size = 1;
+ bitmap->buffer[0] = 0;
+ bitmap->bit_size = 0;
+ bitmap->rlw = bitmap->buffer;
+}
+
+void ewah_free(struct ewah_bitmap *bitmap)
+{
+ if (bitmap->alloc_size)
+ free(bitmap->buffer);
+
+ free(bitmap);
+}
+
+static void read_new_rlw(struct ewah_iterator *it)
+{
+ const eword_t *word = NULL;
+
+ it->literals = 0;
+ it->compressed = 0;
+
+ while (1) {
+ word = &it->buffer[it->pointer];
+
+ it->rl = rlw_get_running_len(word);
+ it->lw = rlw_get_literal_words(word);
+ it->b = rlw_get_run_bit(word);
+
+ if (it->rl || it->lw)
+ return;
+
+ if (it->pointer < it->buffer_size - 1) {
+ it->pointer++;
+ } else {
+ it->pointer = it->buffer_size;
+ return;
+ }
+ }
+}
+
+bool ewah_iterator_next(eword_t *next, struct ewah_iterator *it)
+{
+ if (it->pointer >= it->buffer_size)
+ return false;
+
+ if (it->compressed < it->rl) {
+ it->compressed++;
+ *next = it->b ? (eword_t)(~0) : 0;
+ } else {
+ assert(it->literals < it->lw);
+
+ it->literals++;
+ it->pointer++;
+
+ assert(it->pointer < it->buffer_size);
+
+ *next = it->buffer[it->pointer];
+ }
+
+ if (it->compressed == it->rl && it->literals == it->lw) {
+ if (++it->pointer < it->buffer_size)
+ read_new_rlw(it);
+ }
+
+ return true;
+}
+
+void ewah_iterator_init(struct ewah_iterator *it, struct ewah_bitmap *parent)
+{
+ it->buffer = parent->buffer;
+ it->buffer_size = parent->buffer_size;
+ it->pointer = 0;
+
+ it->lw = 0;
+ it->rl = 0;
+ it->compressed = 0;
+ it->literals = 0;
+ it->b = false;
+
+ if (it->pointer < it->buffer_size)
+ read_new_rlw(it);
+}
+
+void ewah_dump(struct ewah_bitmap *bitmap)
+{
+ size_t i;
+ fprintf(stderr, "%zu bits | %zu words | ", bitmap->bit_size, bitmap->buffer_size);
+
+ for (i = 0; i < bitmap->buffer_size; ++i)
+ fprintf(stderr, "%016llx ", (unsigned long long)bitmap->buffer[i]);
+
+ fprintf(stderr, "\n");
+}
+
+void ewah_not(struct ewah_bitmap *self)
+{
+ size_t pointer = 0;
+
+ while (pointer < self->buffer_size) {
+ eword_t *word = &self->buffer[pointer];
+ size_t literals, k;
+
+ rlw_xor_run_bit(word);
+ ++pointer;
+
+ literals = rlw_get_literal_words(word);
+ for (k = 0; k < literals; ++k) {
+ self->buffer[pointer] = ~self->buffer[pointer];
+ ++pointer;
+ }
+ }
+}
+
+void ewah_xor(
+ struct ewah_bitmap *bitmap_i,
+ struct ewah_bitmap *bitmap_j,
+ struct ewah_bitmap *out)
+{
+ struct rlw_iterator rlw_i;
+ struct rlw_iterator rlw_j;
+
+ rlwit_init(&rlw_i, bitmap_i);
+ rlwit_init(&rlw_j, bitmap_j);
+
+ while (rlwit_word_size(&rlw_i) > 0 && rlwit_word_size(&rlw_j) > 0) {
+ while (rlw_i.rlw.running_len > 0 || rlw_j.rlw.running_len > 0) {
+ struct rlw_iterator *prey, *predator;
+ size_t index;
+ bool negate_words;
+
+ if (rlw_i.rlw.running_len < rlw_j.rlw.running_len) {
+ prey = &rlw_i;
+ predator = &rlw_j;
+ } else {
+ prey = &rlw_j;
+ predator = &rlw_i;
+ }
+
+ negate_words = !!predator->rlw.running_bit;
+ index = rlwit_discharge(prey, out, predator->rlw.running_len, negate_words);
+
+ ewah_add_empty_words(out, negate_words, predator->rlw.running_len - index);
+ rlwit_discard_first_words(predator, predator->rlw.running_len);
+ }
+
+ size_t literals = min_size(rlw_i.rlw.literal_words, rlw_j.rlw.literal_words);
+
+ if (literals) {
+ size_t k;
+
+ for (k = 0; k < literals; ++k) {
+ ewah_add(out,
+ rlw_i.buffer[rlw_i.literal_word_start + k] ^
+ rlw_j.buffer[rlw_j.literal_word_start + k]
+ );
+ }
+
+ rlwit_discard_first_words(&rlw_i, literals);
+ rlwit_discard_first_words(&rlw_j, literals);
+ }
+ }
+
+ if (rlwit_word_size(&rlw_i) > 0) {
+ rlwit_discharge(&rlw_i, out, ~0, false);
+ } else {
+ rlwit_discharge(&rlw_j, out, ~0, false);
+ }
+
+ out->bit_size = max_size(bitmap_i->bit_size, bitmap_j->bit_size);
+}
+
+void ewah_and(
+ struct ewah_bitmap *bitmap_i,
+ struct ewah_bitmap *bitmap_j,
+ struct ewah_bitmap *out)
+{
+ struct rlw_iterator rlw_i;
+ struct rlw_iterator rlw_j;
+
+ rlwit_init(&rlw_i, bitmap_i);
+ rlwit_init(&rlw_j, bitmap_j);
+
+ while (rlwit_word_size(&rlw_i) > 0 && rlwit_word_size(&rlw_j) > 0) {
+ while (rlw_i.rlw.running_len > 0 || rlw_j.rlw.running_len > 0) {
+ struct rlw_iterator *prey, *predator;
+
+ if (rlw_i.rlw.running_len < rlw_j.rlw.running_len) {
+ prey = &rlw_i;
+ predator = &rlw_j;
+ } else {
+ prey = &rlw_j;
+ predator = &rlw_i;
+ }
+
+ if (predator->rlw.running_bit == 0) {
+ ewah_add_empty_words(out, false, predator->rlw.running_len);
+ rlwit_discard_first_words(prey, predator->rlw.running_len);
+ rlwit_discard_first_words(predator, predator->rlw.running_len);
+ } else {
+ size_t index;
+ index = rlwit_discharge(prey, out, predator->rlw.running_len, false);
+ ewah_add_empty_words(out, false, predator->rlw.running_len - index);
+ rlwit_discard_first_words(predator, predator->rlw.running_len);
+ }
+ }
+
+ size_t literals = min_size(rlw_i.rlw.literal_words, rlw_j.rlw.literal_words);
+
+ if (literals) {
+ size_t k;
+
+ for (k = 0; k < literals; ++k) {
+ ewah_add(out,
+ rlw_i.buffer[rlw_i.literal_word_start + k] &
+ rlw_j.buffer[rlw_j.literal_word_start + k]
+ );
+ }
+
+ rlwit_discard_first_words(&rlw_i, literals);
+ rlwit_discard_first_words(&rlw_j, literals);
+ }
+ }
+
+ if (rlwit_word_size(&rlw_i) > 0) {
+ rlwit_discharge_empty(&rlw_i, out);
+ } else {
+ rlwit_discharge_empty(&rlw_j, out);
+ }
+
+ out->bit_size = max_size(bitmap_i->bit_size, bitmap_j->bit_size);
+}
+
+void ewah_and_not(
+ struct ewah_bitmap *bitmap_i,
+ struct ewah_bitmap *bitmap_j,
+ struct ewah_bitmap *out)
+{
+ struct rlw_iterator rlw_i;
+ struct rlw_iterator rlw_j;
+
+ rlwit_init(&rlw_i, bitmap_i);
+ rlwit_init(&rlw_j, bitmap_j);
+
+ while (rlwit_word_size(&rlw_i) > 0 && rlwit_word_size(&rlw_j) > 0) {
+ while (rlw_i.rlw.running_len > 0 || rlw_j.rlw.running_len > 0) {
+ struct rlw_iterator *prey, *predator;
+
+ if (rlw_i.rlw.running_len < rlw_j.rlw.running_len) {
+ prey = &rlw_i;
+ predator = &rlw_j;
+ } else {
+ prey = &rlw_j;
+ predator = &rlw_i;
+ }
+
+ if ((predator->rlw.running_bit && prey == &rlw_i) ||
+ (!predator->rlw.running_bit && prey != &rlw_i)) {
+ ewah_add_empty_words(out, false, predator->rlw.running_len);
+ rlwit_discard_first_words(prey, predator->rlw.running_len);
+ rlwit_discard_first_words(predator, predator->rlw.running_len);
+ } else {
+ size_t index;
+ bool negate_words;
+
+ negate_words = (&rlw_i != prey);
+ index = rlwit_discharge(prey, out, predator->rlw.running_len, negate_words);
+ ewah_add_empty_words(out, negate_words, predator->rlw.running_len - index);
+ rlwit_discard_first_words(predator, predator->rlw.running_len);
+ }
+ }
+
+ size_t literals = min_size(rlw_i.rlw.literal_words, rlw_j.rlw.literal_words);
+
+ if (literals) {
+ size_t k;
+
+ for (k = 0; k < literals; ++k) {
+ ewah_add(out,
+ rlw_i.buffer[rlw_i.literal_word_start + k] &
+ ~(rlw_j.buffer[rlw_j.literal_word_start + k])
+ );
+ }
+
+ rlwit_discard_first_words(&rlw_i, literals);
+ rlwit_discard_first_words(&rlw_j, literals);
+ }
+ }
+
+ if (rlwit_word_size(&rlw_i) > 0) {
+ rlwit_discharge(&rlw_i, out, ~0, false);
+ } else {
+ rlwit_discharge_empty(&rlw_j, out);
+ }
+
+ out->bit_size = max_size(bitmap_i->bit_size, bitmap_j->bit_size);
+}
+
+void ewah_or(
+ struct ewah_bitmap *bitmap_i,
+ struct ewah_bitmap *bitmap_j,
+ struct ewah_bitmap *out)
+{
+ struct rlw_iterator rlw_i;
+ struct rlw_iterator rlw_j;
+
+ rlwit_init(&rlw_i, bitmap_i);
+ rlwit_init(&rlw_j, bitmap_j);
+
+ while (rlwit_word_size(&rlw_i) > 0 && rlwit_word_size(&rlw_j) > 0) {
+ while (rlw_i.rlw.running_len > 0 || rlw_j.rlw.running_len > 0) {
+ struct rlw_iterator *prey, *predator;
+
+ if (rlw_i.rlw.running_len < rlw_j.rlw.running_len) {
+ prey = &rlw_i;
+ predator = &rlw_j;
+ } else {
+ prey = &rlw_j;
+ predator = &rlw_i;
+ }
+
+
+ if (predator->rlw.running_bit) {
+ ewah_add_empty_words(out, false, predator->rlw.running_len);
+ rlwit_discard_first_words(prey, predator->rlw.running_len);
+ rlwit_discard_first_words(predator, predator->rlw.running_len);
+ } else {
+ size_t index;
+ index = rlwit_discharge(prey, out, predator->rlw.running_len, false);
+ ewah_add_empty_words(out, false, predator->rlw.running_len - index);
+ rlwit_discard_first_words(predator, predator->rlw.running_len);
+ }
+ }
+
+ size_t literals = min_size(rlw_i.rlw.literal_words, rlw_j.rlw.literal_words);
+
+ if (literals) {
+ size_t k;
+
+ for (k = 0; k < literals; ++k) {
+ ewah_add(out,
+ rlw_i.buffer[rlw_i.literal_word_start + k] |
+ rlw_j.buffer[rlw_j.literal_word_start + k]
+ );
+ }
+
+ rlwit_discard_first_words(&rlw_i, literals);
+ rlwit_discard_first_words(&rlw_j, literals);
+ }
+ }
+
+ if (rlwit_word_size(&rlw_i) > 0) {
+ rlwit_discharge(&rlw_i, out, ~0, false);
+ } else {
+ rlwit_discharge(&rlw_j, out, ~0, false);
+ }
+
+ out->bit_size = max_size(bitmap_i->bit_size, bitmap_j->bit_size);
+}
+
+
+#define BITMAP_POOL_MAX 16
+static struct ewah_bitmap *bitmap_pool[BITMAP_POOL_MAX];
+static size_t bitmap_pool_size;
+
+struct ewah_bitmap *ewah_pool_new(void)
+{
+ if (bitmap_pool_size)
+ return bitmap_pool[--bitmap_pool_size];
+
+ return ewah_new();
+}
+
+void ewah_pool_free(struct ewah_bitmap *bitmap)
+{
+ if (bitmap == NULL)
+ return;
+
+ if (bitmap_pool_size == BITMAP_POOL_MAX ||
+ bitmap->alloc_size == 0) {
+ ewah_free(bitmap);
+ return;
+ }
+
+ ewah_clear(bitmap);
+ bitmap_pool[bitmap_pool_size++] = bitmap;
+}
+
+uint32_t
+ewah_checksum(struct ewah_bitmap *self)
+{
+ const uint8_t *p = (uint8_t *)self->buffer;
+ uint32_t crc = (uint32_t)self->bit_size;
+ size_t size = self->buffer_size * sizeof(eword_t);
+
+ while (size--)
+ crc = (crc << 5) - crc + (uint32_t)*p++;
+
+ return crc;
+}
diff --git a/ewah/ewah_io.c b/ewah/ewah_io.c
new file mode 100644
index 0000000..b44c90e
--- /dev/null
+++ b/ewah/ewah_io.c
@@ -0,0 +1,199 @@
+/**
+ * Copyright 2013, GitHub, Inc
+ * Copyright 2009-2013, Daniel Lemire, Cliff Moon,
+ * David McIntosh, Robert Becho, Google Inc. and Veronika Zenz
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+#include <stdlib.h>
+#include <unistd.h>
+#include <stdio.h>
+
+#include "git-compat-util.h"
+#include "ewok.h"
+
+int ewah_serialize_native(struct ewah_bitmap *self, int fd)
+{
+ uint32_t write32;
+ size_t to_write = self->buffer_size * 8;
+
+ /* 32 bit -- bit size fr the map */
+ write32 = (uint32_t)self->bit_size;
+ if (write(fd, &write32, 4) != 4)
+ return -1;
+
+ /** 32 bit -- number of compressed 64-bit words */
+ write32 = (uint32_t)self->buffer_size;
+ if (write(fd, &write32, 4) != 4)
+ return -1;
+
+ if (write(fd, self->buffer, to_write) != to_write)
+ return -1;
+
+ /** 32 bit -- position for the RLW */
+ write32 = self->rlw - self->buffer;
+ if (write(fd, &write32, 4) != 4)
+ return -1;
+
+ return (3 * 4) + to_write;
+}
+
+int ewah_serialize(struct ewah_bitmap *self, int fd)
+{
+ size_t i;
+ eword_t dump[2048];
+ const size_t words_per_dump = sizeof(dump) / sizeof(eword_t);
+
+ /* 32 bit -- bit size fr the map */
+ uint32_t bitsize = htonl((uint32_t)self->bit_size);
+ if (write(fd, &bitsize, 4) != 4)
+ return -1;
+
+ /** 32 bit -- number of compressed 64-bit words */
+ uint32_t word_count = htonl((uint32_t)self->buffer_size);
+ if (write(fd, &word_count, 4) != 4)
+ return -1;
+
+ /** 64 bit x N -- compressed words */
+ const eword_t *buffer = self->buffer;
+ size_t words_left = self->buffer_size;
+
+ while (words_left >= words_per_dump) {
+ for (i = 0; i < words_per_dump; ++i, ++buffer)
+ dump[i] = htonll(*buffer);
+
+ if (write(fd, dump, sizeof(dump)) != sizeof(dump))
+ return -1;
+
+ words_left -= words_per_dump;
+ }
+
+ if (words_left) {
+ for (i = 0; i < words_left; ++i, ++buffer)
+ dump[i] = htonll(*buffer);
+
+ if (write(fd, dump, words_left * 8) != words_left * 8)
+ return -1;
+ }
+
+ /** 32 bit -- position for the RLW */
+ uint32_t rlw_pos = (uint8_t*)self->rlw - (uint8_t *)self->buffer;
+ rlw_pos = htonl(rlw_pos / sizeof(eword_t));
+
+ if (write(fd, &rlw_pos, 4) != 4)
+ return -1;
+
+ return 0;
+}
+
+int ewah_read_mmap(struct ewah_bitmap *self, void *map, size_t len)
+{
+ uint32_t *read32 = map;
+ eword_t *read64;
+ size_t i;
+
+ self->bit_size = ntohl(*read32++);
+ self->buffer_size = self->alloc_size = ntohl(*read32++);
+ self->buffer = ewah_realloc(self->buffer, self->alloc_size * sizeof(eword_t));
+
+ if (!self->buffer)
+ return -1;
+
+ for (i = 0, read64 = (void *)read32; i < self->buffer_size; ++i) {
+ self->buffer[i] = ntohll(*read64++);
+ }
+
+ read32 = (void *)read64;
+ self->rlw = self->buffer + ntohl(*read32++);
+
+ return (char *)read32 - (char *)map;
+}
+
+int ewah_read_mmap_native(struct ewah_bitmap *self, void *map, size_t len)
+{
+ uint32_t *read32 = map;
+
+ self->bit_size = *read32++;
+ self->buffer_size = *read32++;
+
+ if (self->alloc_size)
+ free(self->buffer);
+
+ self->alloc_size = 0;
+ self->buffer = (eword_t *)read32;
+
+ read32 += self->buffer_size * 2;
+ self->rlw = self->buffer + *read32++;
+
+ return (char *)read32 - (char *)map;
+}
+
+int ewah_deserialize(struct ewah_bitmap *self, int fd)
+{
+ size_t i;
+ eword_t dump[2048];
+ const size_t words_per_dump = sizeof(dump) / sizeof(eword_t);
+
+ ewah_clear(self);
+
+ /* 32 bit -- bit size fr the map */
+ uint32_t bitsize;
+ if (read(fd, &bitsize, 4) != 4)
+ return -1;
+
+ self->bit_size = (size_t)ntohl(bitsize);
+
+ /** 32 bit -- number of compressed 64-bit words */
+ uint32_t word_count;
+ if (read(fd, &word_count, 4) != 4)
+ return -1;
+
+ self->buffer_size = self->alloc_size = (size_t)ntohl(word_count);
+ self->buffer = ewah_realloc(self->buffer, self->alloc_size * sizeof(eword_t));
+
+ if (!self->buffer)
+ return -1;
+
+ /** 64 bit x N -- compressed words */
+ eword_t *buffer = self->buffer;
+ size_t words_left = self->buffer_size;
+
+ while (words_left >= words_per_dump) {
+ if (read(fd, dump, sizeof(dump)) != sizeof(dump))
+ return -1;
+
+ for (i = 0; i < words_per_dump; ++i, ++buffer)
+ *buffer = ntohll(dump[i]);
+
+ words_left -= words_per_dump;
+ }
+
+ if (words_left) {
+ if (read(fd, dump, words_left * 8) != words_left * 8)
+ return -1;
+
+ for (i = 0; i < words_left; ++i, ++buffer)
+ *buffer = ntohll(dump[i]);
+ }
+
+ /** 32 bit -- position for the RLW */
+ uint32_t rlw_pos;
+ if (read(fd, &rlw_pos, 4) != 4)
+ return -1;
+
+ self->rlw = self->buffer + ntohl(rlw_pos);
+
+ return 0;
+}
diff --git a/ewah/ewah_rlw.c b/ewah/ewah_rlw.c
new file mode 100644
index 0000000..7e10fd4
--- /dev/null
+++ b/ewah/ewah_rlw.c
@@ -0,0 +1,124 @@
+/**
+ * Copyright 2013, GitHub, Inc
+ * Copyright 2009-2013, Daniel Lemire, Cliff Moon,
+ * David McIntosh, Robert Becho, Google Inc. and Veronika Zenz
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+#include <assert.h>
+#include <stdlib.h>
+#include <unistd.h>
+#include <string.h>
+
+#include "ewok.h"
+#include "ewok_rlw.h"
+
+extern size_t ewah_add_empty_words(struct ewah_bitmap *self, bool v, size_t number);
+extern void ewah_add_dirty_words(
+ struct ewah_bitmap *self, const eword_t *buffer, size_t number, bool negate);
+
+static inline bool next_word(struct rlw_iterator *it)
+{
+ if (it->pointer >= it->size)
+ return false;
+
+ it->rlw.word = &it->buffer[it->pointer];
+ it->pointer += rlw_get_literal_words(it->rlw.word) + 1;
+
+ it->rlw.literal_words = rlw_get_literal_words(it->rlw.word);
+ it->rlw.running_len = rlw_get_running_len(it->rlw.word);
+ it->rlw.running_bit = rlw_get_run_bit(it->rlw.word);
+ it->rlw.literal_word_offset = 0;
+
+ return true;
+}
+
+void rlwit_init(struct rlw_iterator *it, struct ewah_bitmap *bitmap)
+{
+ it->buffer = bitmap->buffer;
+ it->size = bitmap->buffer_size;
+ it->pointer = 0;
+
+ next_word(it);
+
+ it->literal_word_start = rlwit_literal_words(it) + it->rlw.literal_word_offset;
+}
+
+void rlwit_discard_first_words(struct rlw_iterator *it, size_t x)
+{
+ while (x > 0) {
+ size_t discard;
+
+ if (it->rlw.running_len > x) {
+ it->rlw.running_len -= x;
+ return;
+ }
+
+ x -= it->rlw.running_len;
+ it->rlw.running_len = 0;
+
+ discard = (x > it->rlw.literal_words) ? it->rlw.literal_words : x;
+
+ it->literal_word_start += discard;
+ it->rlw.literal_words -= discard;
+ x -= discard;
+
+ if (x > 0 || rlwit_word_size(it) == 0) {
+ if (!next_word(it))
+ break;
+
+ it->literal_word_start =
+ rlwit_literal_words(it) + it->rlw.literal_word_offset;
+ }
+ }
+}
+
+size_t rlwit_discharge(
+ struct rlw_iterator *it, struct ewah_bitmap *out, size_t max, bool negate)
+{
+ size_t index = 0;
+
+ while (index < max && rlwit_word_size(it) > 0) {
+ size_t pd, pl = it->rlw.running_len;
+
+ if (index + pl > max) {
+ pl = max - index;
+ }
+
+ ewah_add_empty_words(out, it->rlw.running_bit ^ negate, pl);
+ index += pl;
+
+ pd = it->rlw.literal_words;
+ if (pd + index > max) {
+ pd = max - index;
+ }
+
+ ewah_add_dirty_words(out,
+ it->buffer + it->literal_word_start, pd, negate);
+
+ rlwit_discard_first_words(it, pd + pl);
+ index += pd;
+ }
+
+ return index;
+}
+
+void rlwit_discharge_empty(struct rlw_iterator *it, struct ewah_bitmap *out)
+{
+ while (rlwit_word_size(it) > 0) {
+ ewah_add_empty_words(out, false, rlwit_word_size(it));
+ rlwit_discard_first_words(it, rlwit_word_size(it));
+ }
+}
diff --git a/ewah/ewok.h b/ewah/ewok.h
new file mode 100644
index 0000000..691e21e
--- /dev/null
+++ b/ewah/ewok.h
@@ -0,0 +1,194 @@
+/**
+ * Copyright 2013, GitHub, Inc
+ * Copyright 2009-2013, Daniel Lemire, Cliff Moon,
+ * David McIntosh, Robert Becho, Google Inc. and Veronika Zenz
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+#ifndef __EWOK_BITMAP_C__
+#define __EWOK_BITMAP_C__
+
+#include <stdbool.h>
+#include <stdint.h>
+
+#ifndef ewah_malloc
+# define ewah_malloc malloc
+#endif
+#ifndef ewah_realloc
+# define ewah_realloc realloc
+#endif
+#ifndef ewah_calloc
+# define ewah_calloc calloc
+#endif
+
+typedef uint64_t eword_t;
+#define BITS_IN_WORD (sizeof(eword_t) * 8)
+
+struct ewah_bitmap {
+ eword_t *buffer;
+ size_t buffer_size;
+ size_t alloc_size;
+ size_t bit_size;
+ eword_t *rlw;
+};
+
+typedef void (*ewah_callback)(size_t pos, void *);
+
+struct ewah_bitmap *ewah_pool_new(void);
+void ewah_pool_free(struct ewah_bitmap *bitmap);
+
+/**
+ * Allocate a new EWAH Compressed bitmap
+ */
+struct ewah_bitmap *ewah_new(void);
+
+/**
+ * Clear all the bits in the bitmap. Does not free or resize
+ * memory.
+ */
+void ewah_clear(struct ewah_bitmap *bitmap);
+
+/**
+ * Free all the memory of the bitmap
+ */
+void ewah_free(struct ewah_bitmap *bitmap);
+
+int ewah_serialize(struct ewah_bitmap *self, int fd);
+int ewah_serialize_native(struct ewah_bitmap *self, int fd);
+
+int ewah_deserialize(struct ewah_bitmap *self, int fd);
+int ewah_read_mmap(struct ewah_bitmap *self, void *map, size_t len);
+int ewah_read_mmap_native(struct ewah_bitmap *self, void *map, size_t len);
+
+uint32_t ewah_checksum(struct ewah_bitmap *self);
+
+/**
+ * Logical not (bitwise negation) in-place on the bitmap
+ *
+ * This operation is linear time based on the size of the bitmap.
+ */
+void ewah_not(struct ewah_bitmap *self);
+
+/**
+ * Call the given callback with the position of every single bit
+ * that has been set on the bitmap.
+ *
+ * This is an efficient operation that does not fully decompress
+ * the bitmap.
+ */
+void ewah_each_bit(struct ewah_bitmap *self, ewah_callback callback, void *payload);
+
+/**
+ * Set a given bit on the bitmap.
+ *
+ * The bit at position `pos` will be set to true. Because of the
+ * way that the bitmap is compressed, a set bit cannot be unset
+ * later on.
+ *
+ * Furthermore, since the bitmap uses streaming compression, bits
+ * can only set incrementally.
+ *
+ * E.g.
+ * ewah_set(bitmap, 1); // ok
+ * ewah_set(bitmap, 76); // ok
+ * ewah_set(bitmap, 77); // ok
+ * ewah_set(bitmap, 8712800127); // ok
+ * ewah_set(bitmap, 25); // failed, assert raised
+ */
+void ewah_set(struct ewah_bitmap *self, size_t i);
+
+struct ewah_iterator {
+ const eword_t *buffer;
+ size_t buffer_size;
+
+ size_t pointer;
+ eword_t compressed, literals;
+ eword_t rl, lw;
+ bool b;
+};
+
+/**
+ * Initialize a new iterator to run through the bitmap in uncompressed form.
+ *
+ * The iterator can be stack allocated. The underlying bitmap must not be freed
+ * before the iteration is over.
+ *
+ * E.g.
+ *
+ * struct ewah_bitmap *bitmap = ewah_new();
+ * struct ewah_iterator it;
+ *
+ * ewah_iterator_init(&it, bitmap);
+ */
+void ewah_iterator_init(struct ewah_iterator *it, struct ewah_bitmap *parent);
+
+/**
+ * Yield every single word in the bitmap in uncompressed form. This is:
+ * yield single words (32-64 bits) where each bit represents an actual
+ * bit from the bitmap.
+ *
+ * Return: true if a word was yield, false if there are no words left
+ */
+bool ewah_iterator_next(eword_t *next, struct ewah_iterator *it);
+
+void ewah_or(
+ struct ewah_bitmap *bitmap_i,
+ struct ewah_bitmap *bitmap_j,
+ struct ewah_bitmap *out);
+
+void ewah_and_not(
+ struct ewah_bitmap *bitmap_i,
+ struct ewah_bitmap *bitmap_j,
+ struct ewah_bitmap *out);
+
+void ewah_xor(
+ struct ewah_bitmap *bitmap_i,
+ struct ewah_bitmap *bitmap_j,
+ struct ewah_bitmap *out);
+
+void ewah_and(
+ struct ewah_bitmap *bitmap_i,
+ struct ewah_bitmap *bitmap_j,
+ struct ewah_bitmap *out);
+
+void ewah_dump(struct ewah_bitmap *bitmap);
+
+/**
+ * Uncompressed, old-school bitmap that can be efficiently compressed
+ * into an `ewah_bitmap`.
+ */
+struct bitmap {
+ eword_t *words;
+ size_t word_alloc;
+};
+
+struct bitmap *bitmap_new(void);
+void bitmap_set(struct bitmap *self, size_t pos);
+void bitmap_clear(struct bitmap *self, size_t pos);
+bool bitmap_get(struct bitmap *self, size_t pos);
+void bitmap_reset(struct bitmap *bitmap);
+void bitmap_free(struct bitmap *self);
+bool bitmap_equals(struct bitmap *self, struct bitmap *other);
+
+struct ewah_bitmap * bitmap_to_ewah(struct bitmap *bitmap);
+struct bitmap *ewah_to_bitmap(struct ewah_bitmap *ewah);
+
+void bitmap_and_not_inplace(struct bitmap *self, struct bitmap *other);
+void bitmap_or_inplace(struct bitmap *self, struct ewah_bitmap *other);
+
+void bitmap_each_bit(struct bitmap *self, ewah_callback callback, void *data);
+size_t bitmap_popcount(struct bitmap *self);
+
+#endif
diff --git a/ewah/ewok_rlw.h b/ewah/ewok_rlw.h
new file mode 100644
index 0000000..2e31836
--- /dev/null
+++ b/ewah/ewok_rlw.h
@@ -0,0 +1,114 @@
+/**
+ * Copyright 2013, GitHub, Inc
+ * Copyright 2009-2013, Daniel Lemire, Cliff Moon,
+ * David McIntosh, Robert Becho, Google Inc. and Veronika Zenz
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+#ifndef __EWOK_RLW_H__
+#define __EWOK_RLW_H__
+
+#define RLW_RUNNING_BITS (sizeof(eword_t) * 4)
+#define RLW_LITERAL_BITS (sizeof(eword_t) * 8 - 1 - RLW_RUNNING_BITS)
+
+#define RLW_LARGEST_RUNNING_COUNT (((eword_t)1 << RLW_RUNNING_BITS) - 1)
+#define RLW_LARGEST_LITERAL_COUNT (((eword_t)1 << RLW_LITERAL_BITS) - 1)
+
+#define RLW_LARGEST_RUNNING_COUNT_SHIFT (RLW_LARGEST_RUNNING_COUNT << 1)
+
+#define RLW_RUNNING_LEN_PLUS_BIT (((eword_t)1 << (RLW_RUNNING_BITS + 1)) - 1)
+
+static bool rlw_get_run_bit(const eword_t *word)
+{
+ return *word & (eword_t)1;
+}
+
+static inline void rlw_set_run_bit(eword_t *word, bool b)
+{
+ if (b) {
+ *word |= (eword_t)1;
+ } else {
+ *word &= (eword_t)(~1);
+ }
+}
+
+static inline void rlw_xor_run_bit(eword_t *word)
+{
+ if (*word & 1) {
+ *word &= (eword_t)(~1);
+ } else {
+ *word |= (eword_t)1;
+ }
+}
+
+static inline void rlw_set_running_len(eword_t *word, eword_t l)
+{
+ *word |= RLW_LARGEST_RUNNING_COUNT_SHIFT;
+ *word &= (l << 1) | (~RLW_LARGEST_RUNNING_COUNT_SHIFT);
+}
+
+static inline eword_t rlw_get_running_len(const eword_t *word)
+{
+ return (*word >> 1) & RLW_LARGEST_RUNNING_COUNT;
+}
+
+static inline eword_t rlw_get_literal_words(const eword_t *word)
+{
+ return *word >> (1 + RLW_RUNNING_BITS);
+}
+
+static inline void rlw_set_literal_words(eword_t *word, eword_t l)
+{
+ *word |= ~RLW_RUNNING_LEN_PLUS_BIT;
+ *word &= (l << (RLW_RUNNING_BITS + 1)) | RLW_RUNNING_LEN_PLUS_BIT;
+}
+
+static inline eword_t rlw_size(const eword_t *self)
+{
+ return rlw_get_running_len(self) + rlw_get_literal_words(self);
+}
+
+struct rlw_iterator {
+ const eword_t *buffer;
+ size_t size;
+ size_t pointer;
+ size_t literal_word_start;
+
+ struct {
+ const eword_t *word;
+ int literal_words;
+ int running_len;
+ int literal_word_offset;
+ int running_bit;
+ } rlw;
+};
+
+void rlwit_init(struct rlw_iterator *it, struct ewah_bitmap *bitmap);
+void rlwit_discard_first_words(struct rlw_iterator *it, size_t x);
+size_t rlwit_discharge(
+ struct rlw_iterator *it, struct ewah_bitmap *out, size_t max, bool negate);
+void rlwit_discharge_empty(struct rlw_iterator *it, struct ewah_bitmap *out);
+
+static inline size_t rlwit_word_size(struct rlw_iterator *it)
+{
+ return it->rlw.running_len + it->rlw.literal_words;
+}
+
+static inline size_t rlwit_literal_words(struct rlw_iterator *it)
+{
+ return it->pointer - it->rlw.literal_words;
+}
+
+#endif
--
1.7.9.5
next prev parent reply other threads:[~2013-06-24 23:24 UTC|newest]
Thread overview: 64+ messages / expand[flat|nested] mbox.gz Atom feed top
2013-06-24 23:22 [PATCH 00/16] Speed up Counting Objects with bitmap data Vicent Marti
2013-06-24 23:22 ` [PATCH 01/16] list-objects: mark tree as unparsed when we free its buffer Vicent Marti
2013-06-24 23:22 ` [PATCH 02/16] sha1_file: refactor into `find_pack_object_pos` Vicent Marti
2013-06-25 13:59 ` Thomas Rast
2013-06-24 23:23 ` [PATCH 03/16] pack-objects: use a faster hash table Vicent Marti
2013-06-25 14:03 ` Thomas Rast
2013-06-26 2:14 ` Jeff King
2013-06-26 4:47 ` Jeff King
2013-06-25 17:58 ` Ramkumar Ramachandra
2013-06-25 22:48 ` Junio C Hamano
2013-06-25 23:09 ` Vicent Martí
2013-06-24 23:23 ` [PATCH 04/16] pack-objects: make `pack_name_hash` global Vicent Marti
2013-06-24 23:23 ` [PATCH 05/16] revision: allow setting custom limiter function Vicent Marti
2013-06-24 23:23 ` [PATCH 06/16] sha1_file: export `git_open_noatime` Vicent Marti
2013-06-24 23:23 ` [PATCH 07/16] compat: add endinanness helpers Vicent Marti
2013-06-25 13:08 ` Peter Krefting
2013-06-25 13:25 ` Vicent Martí
2013-06-27 5:56 ` Peter Krefting
2013-06-24 23:23 ` Vicent Marti [this message]
2013-06-25 1:10 ` [PATCH 08/16] ewah: compressed bitmap implementation Junio C Hamano
2013-06-25 22:51 ` Junio C Hamano
2013-06-25 15:38 ` Thomas Rast
2013-06-24 23:23 ` [PATCH 09/16] documentation: add documentation for the bitmap format Vicent Marti
2013-06-25 5:42 ` Shawn Pearce
2013-06-25 19:33 ` Vicent Martí
2013-06-25 21:17 ` Junio C Hamano
2013-06-25 22:08 ` Vicent Martí
2013-06-27 1:11 ` Shawn Pearce
2013-06-27 2:36 ` Vicent Martí
2013-06-27 2:45 ` Jeff King
2013-06-27 16:07 ` Shawn Pearce
2013-06-27 17:17 ` Jeff King
2013-07-01 18:47 ` Colby Ranger
2013-07-01 19:13 ` Shawn Pearce
2013-07-07 9:46 ` Jeff King
2013-07-07 17:27 ` Shawn Pearce
2013-06-26 5:11 ` Jeff King
2013-06-26 18:41 ` Colby Ranger
2013-06-26 22:33 ` Colby Ranger
2013-06-27 0:53 ` Colby Ranger
2013-06-27 1:32 ` Shawn Pearce
2013-06-27 1:29 ` Shawn Pearce
2013-06-25 15:58 ` Thomas Rast
2013-06-25 22:30 ` Vicent Martí
2013-06-26 23:12 ` Thomas Rast
2013-06-26 23:19 ` Thomas Rast
2013-06-24 23:23 ` [PATCH 10/16] pack-objects: use bitmaps when packing objects Vicent Marti
2013-06-25 12:48 ` Ramkumar Ramachandra
2013-06-25 15:58 ` Thomas Rast
2013-06-25 23:06 ` Junio C Hamano
2013-06-25 23:14 ` Vicent Martí
2013-06-24 23:23 ` [PATCH 11/16] rev-list: add bitmap mode to speed up lists Vicent Marti
2013-06-25 16:22 ` Thomas Rast
2013-06-26 1:45 ` Vicent Martí
2013-06-26 23:13 ` Thomas Rast
2013-06-26 5:22 ` Jeff King
2013-06-24 23:23 ` [PATCH 12/16] pack-objects: implement bitmap writing Vicent Marti
2013-06-24 23:23 ` [PATCH 13/16] repack: consider bitmaps when performing repacks Vicent Marti
2013-06-25 23:00 ` Junio C Hamano
2013-06-25 23:16 ` Vicent Martí
2013-06-24 23:23 ` [PATCH 14/16] sha1_file: implement `nth_packed_object_info` Vicent Marti
2013-06-24 23:23 ` [PATCH 15/16] write-bitmap: implement new git command to write bitmaps Vicent Marti
2013-06-24 23:23 ` [PATCH 16/16] rev-list: Optimize --count using bitmaps too Vicent Marti
2013-06-25 16:05 ` [PATCH 00/16] Speed up Counting Objects with bitmap data Thomas Rast
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