v2: fix reindex skipping NNTP article numbers

`public-inbox-index --reindex' could cause NNTP article number
gaps to form when it also has to deal with new,
never-before-seen commits in mirrors running off `git fetch'.

Fix this by running two distinct invocations of ->index_sync;
once to only reindex old commits, and a second time to index
new commits.

This does not appear to be a problem on v1 at the moment,
but I'll need more time to analyze this.

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